Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPA3746Possible RND Superfamily transporter. (789 aa)    
Predicted Functional Partners:
RPA1991
Conserved hypothetical protein.
  
     0.675
RPA1134
Conserved hypothetical protein.
  
     0.650
RPA4435
Hypothetical protein.
  
     0.613
RPA3779
Conserved hypothetical protein; InterPro IPR000104:IPR005490 COGs COG1376.
  
     0.602
RPA1622
Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
    0.595
RPA3748
Elongator protein 3/MiaB/NifB.
 
     0.570
RPA2834
Conserved hypothetical protein.
  
     0.543
RPA0153
Possible outer membrane receptor for Fe transport.
  
     0.534
RPA1826
Conserved hypothetical protein; InterPro IPR006311:IPR006626.
  
     0.527
RPA0405
Conserved hypothetical protein; COGs COG2358.
 
     0.522
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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