STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA3754Transglutaminase-like domain. (1131 aa)    
Predicted Functional Partners:
RPA3753
DUF404.
  
 0.982
RPA3752
Transglutaminase-like domain.
 
    
0.813
RPA2177
DUF404; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
 0.748
RPA1272
Transglutaminase-like domain.
 
     0.742
RPA3312
Transglutaminase-like domain.
 
    0.720
RPA2176
DUF403.
 
  
 0.687
RPA2098
Glutamine amidotransferase class-I.
  
 
  0.534
RPA0955
Putative 5`-nucleotidase family protein; Belongs to the 5'-nucleotidase family.
  
 
  0.515
surE
Survival protein surE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
    
  0.515
hpcH
Putative 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the HpcH/HpaI aldolase family.
       0.441
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.