Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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hpcHPutative 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the HpcH/HpaI aldolase family. (258 aa)    
Predicted Functional Partners:
hpcG
2-oxo-hepta-3-ene-1,7-dioate hydratase.
 
 0.997
gabD1
Succinate-semialdehyde dehydrogenase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the aldehyde dehydrogenase family.
  
 
 0.912
gabD2
Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.912
hpaD
Putative 3,4-dihydroxyphenylacetate 2,3-dioxygenase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
  
 0.898
RPA3762
Putative 2-oxo-3-ene-1,7-dioic acid hydratase.
 
  
 0.779
hpcD
Putative 5-carboxymethyl-2-hydroxymuconate isomerase.
 
  
 0.752
RPA3756
Malate dehydrogenase-like protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the LDH2/MDH2 oxidoreductase family.
 
    0.664
RPA3761
Putative catechol 2,3-dioxygenase.
 
   
 0.598
fahA
Fumarylacetoacetate hydrolase.
  
  
 0.550
RPA2986
Probable 5-carboxymethyl-2-hydroxymuconate delta isomerase.
  
  
 0.529
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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