Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPA3769Probable transcriptional regulator, TetR family. (226 aa)    
Predicted Functional Partners:
paaI
Putative phenylacetic acid degredation protein.
 
     0.706
RPA3764
Putative 2Fe:2S ferredoxin; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
  
 0.687
paaA
Phenylacetic acid degradation protein paaA; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
     0.680
RPA1725
Putative aldehyde dehydrogenase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
   
 0.645
paaB
Phenylacetic acid degradation protein paaB; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
     0.584
RPA4675
Possible 3-(3-hydroxy-phenyl)propionate hydroxylase.
  
   
 0.567
paaC
Phenylacetic acid degradation protein paaC; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
     0.564
paaD
Putative phenylacetic acid degradation protein PaaD.
 
     0.542
RPA4019
Putative branched-chain amino acid ABC transporter system substrate-binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
     0.473
cphA1
Putative beta lactamase precursor.
  
     0.469
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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