Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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RPA3775Putative RND efflux transporter; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1034 aa)    
Predicted Functional Partners:
RPA3776
Possible RND efflux membrane fusion protein precursor; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.953
RPA2573
Possible membrane protein, permease; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.724
RPA3482
Putative membrane protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.719
mex
Possible RND efflux membrane fusion protein precursor; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.672
RPA3777
Possible transcriptional regulator, TetR family.
       0.656
RPA1807
Possible heavy metal efflux pump, HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.589
RPA4096
Possible multidrug efflux membrane fusion protein mexE; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.574
RPA0095
Putative multidrug efflux membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.558
mexE
Pseudogene of RND multidrug efflux transporter MexF; Signal predicted by SignalP 2.0 HMM (Signal peptideprobabilty 0.820) with cleavage site probability 0.388 atresidue 29; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.556
mexC1
Putative RND multidrug efflux membrane fusion protein MexC precursor; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.502
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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