STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
RPA3783Glycosyl transferase, family 39. (498 aa)    
Predicted Functional Partners:
RPA3784
Putative dolichol-phosphate mannosyltransferase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
 0.996
RPA0353
Conserved hypothetical protein.
  
     0.743
RPA0393
PA-phosphatase related phosphoesterase.
 
    0.634
RPA2555
Glycosyl transferase, family 39.
 
    0.596
RPA2557
Glycosyl transferase, family 2; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
  
 0.552
RPA3782
Putative rubredoxin reductase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
       0.499
RPA3936
Conserved hypothetical protein; COGs COG1807.
  
     0.484
RPA3061
Possible permease.
 
   
 0.475
fkbM
Possible methyltransferase, FkbM family.
  
     0.471
RPA1616
Conserved hypothetical protein.
  
     0.454
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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