RPA3790 protein (Rhodopseudomonas palustris CGA009)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RPA3790

Putative efflux protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (267 aa)

Predicted Functional Partners:

RPA3788

0.978

RPA3789

0.977

RPA3791

0.887

RPA2581

0.667

RPA1810

0.642

RPA0683

0.604

RPA2572

0.602

RPA3792

0.586

RPA2374

0.555

RPA4086

0.539

Your Current Organism:

Rhodopseudomonas palustris CGA009

NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
RPA0683	RPA3788	Possible ABC transporter permease component.	Putative ABC transporter, ATP-binding protein.	0.565
RPA0683	RPA3789	Possible ABC transporter permease component.	Putative ATP-binding component of a transport system.	0.728
RPA0683	RPA3790	Possible ABC transporter permease component.	Putative efflux protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.604
RPA0683	RPA4086	Possible ABC transporter permease component.	Probable permease of ABC transporter.	0.400
RPA1810	RPA2581	Putative outer membrane protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	Putative outer membrane protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	0.909
RPA1810	RPA3790	Putative outer membrane protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	Putative efflux protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.642
RPA2374	RPA3790	Hypothetical protein; COGs COG1538.	Putative efflux protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.555
RPA2572	RPA3790	Possible outer membrane efflux protein.	Putative efflux protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.602
RPA2581	RPA1810	Putative outer membrane protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	Putative outer membrane protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	0.909
RPA2581	RPA3790	Putative outer membrane protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	Putative efflux protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.667
RPA3788	RPA0683	Putative ABC transporter, ATP-binding protein.	Possible ABC transporter permease component.	0.565
RPA3788	RPA3789	Putative ABC transporter, ATP-binding protein.	Putative ATP-binding component of a transport system.	0.998
RPA3788	RPA3790	Putative ABC transporter, ATP-binding protein.	Putative efflux protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.978
RPA3788	RPA3791	Putative ABC transporter, ATP-binding protein.	Probable transcriptional regulator, TetR family.	0.884
RPA3788	RPA3792	Putative ABC transporter, ATP-binding protein.	Putative diguanylate cyclase (GGDEF).	0.574
RPA3788	RPA4086	Putative ABC transporter, ATP-binding protein.	Probable permease of ABC transporter.	0.570
RPA3789	RPA0683	Putative ATP-binding component of a transport system.	Possible ABC transporter permease component.	0.728
RPA3789	RPA3788	Putative ATP-binding component of a transport system.	Putative ABC transporter, ATP-binding protein.	0.998
RPA3789	RPA3790	Putative ATP-binding component of a transport system.	Putative efflux protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.977
RPA3789	RPA3791	Putative ATP-binding component of a transport system.	Probable transcriptional regulator, TetR family.	0.885