Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RPA3791Probable transcriptional regulator, TetR family. (238 aa)    
Predicted Functional Partners:
RPA3790
Putative efflux protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
 0.869
RPA3789
Putative ATP-binding component of a transport system.
     
 0.866
RPA3788
Putative ABC transporter, ATP-binding protein.
       0.865
RPA1966
Probable transcriptional regulator, TetR family.
  
     0.740
RPA3894
Probable transcriptional regulator, TetR family.
  
     0.631
RPA3415
Probable transcriptional regulator, TetR family.
  
     0.630
RPA3792
Putative diguanylate cyclase (GGDEF).
   
   0.588
pth
Putative peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
  
    0.404
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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