Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RPA3857Possible esterase/lipase/outer membrane autotransporter. (674 aa)    
Predicted Functional Partners:
RPA1936
Possible serine protease/outer membrane autotransporter.
  
   
 0.641
RPA3548
Possible serine protease/outer membrane autotransporter.
  
   
 0.617
RPA2162
Possible serine protease/outer membrane autotransporter.
  
   
 0.612
RPA1685
Possible serine protease/outer membrane autotransporter.
  
   
 0.568
tag
Possible 3-methyladenine DNA glycosylase I.
  
    0.502
RPA4011
Possible serine protease/outer membrane autotransporter.
  
  
 0.500
lipA2
Lipoic acid synthetase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.
      
 0.432
RPA0902
Glyoxalase/Bleomycin resistance protein/dioxygenase domain.
  
    0.427
bamA
Putative outer membrane protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
     
 0.411
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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