Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPA3867Conserved hypothetical protein. (386 aa)    
Predicted Functional Partners:
RPA4205
Possible polysaccharide export protein, PST family.
  
 0.801
RPA2753
Conserved hypothetical protein.
 
     0.754
RPA4785
Polysaccharide deacetylase.
 
   
 0.733
RPA2754
Polysaccharide deacetylase.
 
   
 0.719
RPA0880
Hypothetical protein; InterPro IPR000694.
 
     0.715
RPA4581
Conserved hypothetical protein.
 
   
 0.709
RPA2752
Possible succinoglycan biosynthesis transport protein exoP.
 
   
 0.684
RPA0897
Conserved hypothetical protein; InterPro IPR000694 COGs COG2845.
  
     0.679
RPA3420
Conserved unknown protein.
  
     0.649
RPA1508
Conserved hypothetical protein.
  
     0.638
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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