Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPA3868Putatively similar to frnE protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (221 aa)    
Predicted Functional Partners:
RPA2719
Conserved hypothetical protein; COGs COG2346.
  
  
 0.658
RPA3869
Transcriptional regulator, XRE family.
  
    0.620
RPA2869
Possible flavin-dependent oxidoreductase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
    0.561
RPA0336
NADPH-dependent FMN reductase.
 
    0.518
RPA0541
Conserved hypothetical protein.
  
  
 0.451
arsH
Possible arsH protein.
  
    0.444
RPA1483
NAD binding site:FAD dependent oxidoreductase.
 
    0.431
RPA2123
Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
    0.417
RPA3870
Hypothetical protein.
       0.415
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.