Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPA3894Probable transcriptional regulator, TetR family. (207 aa)    
Predicted Functional Partners:
RPA1966
Probable transcriptional regulator, TetR family.
  
     0.709
RPA3893
Putative carboxylesterase; Belongs to the type-B carboxylesterase/lipase family.
       0.697
RPA0093
Transcriptional regulator, TetR family.
  
     0.695
RPA3544
Transcriptional regulator, TetR family.
  
     0.656
RPA3791
Probable transcriptional regulator, TetR family.
  
     0.631
RPA1958
Transcriptional regulator, TetR family.
  
     0.493
RPA1954
Probable transcriptional regulator, TetR family.
  
     0.487
RPA3895
Conserved hypothetical protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
       0.458
RPA3896
Hypothetical protein.
       0.458
fliM
Possible flagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
       0.458
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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