Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RPA3918Conserved hypothetical protein. (268 aa)    
Predicted Functional Partners:
RPA3928
Unknown protein; InterPro IPR006342 COGs COG0500.
    0.852
RPA3919
Possible mannose-1-phosphate guanyltransferase.
  
   0.832
RPA3920
Possible ADP-heptose synthase; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose. In the N-terminal section; belongs to the carbohydrate kinase PfkB family.
 
     0.809
RPA3921
Possible acetoin dehydrogenase (TPP-dependent) beta chain.
     
 0.785
RPA3917
Possible acetolactate synthase large subunit; Belongs to the TPP enzyme family.
     
 0.723
RPA3926
Putative sugar-nucleotide epimerase/dehydratase.
 
 
 
 0.706
RPA3924
Conserved hypothetical protein; InterPro IPR000051 COGs COG0500.
 
   
 0.633
RPA3925
Putative dTDP-glucose 4,6-dehydratase.
 
  
 0.624
RPA3922
Putative acetoin dehydrogenase (TPP-dependent) beta chain.
 
 
 
 0.589
RPA4415
Putative component of multidrug efflux system; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
   
  
 0.553
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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