Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPA3928Unknown protein; InterPro IPR006342 COGs COG0500. (320 aa)    
Predicted Functional Partners:
RPA3918
Conserved hypothetical protein.
    0.852
RPA3924
Conserved hypothetical protein; InterPro IPR000051 COGs COG0500.
 
     0.760
RPA3550
Coenzyme B12-binding:Elongator protein 3/MiaB/NifB.
  
     0.741
RPA3926
Putative sugar-nucleotide epimerase/dehydratase.
 
     0.707
RPA3925
Putative dTDP-glucose 4,6-dehydratase.
 
     0.599
RPA3927
Possible phosphoheptose isomerase.
 
     0.573
RPA3929
Conserved unknown protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
       0.511
RPA3920
Possible ADP-heptose synthase; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose. In the N-terminal section; belongs to the carbohydrate kinase PfkB family.
 
     0.442
RPA3923
Putative acetoin dehydrogenase (TPP-dependent) alpha chain.
 
     0.441
RPA3922
Putative acetoin dehydrogenase (TPP-dependent) beta chain.
 
     0.439
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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