Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPA3944Conserved hypothetical protein; COGs COG0392. (363 aa)    
Predicted Functional Partners:
RPA2457
Hypothetical protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
     0.685
RPA3945
Hypothetical protein.
       0.657
aro
Chorismate mutase.
  
     0.610
RPA0920
GCN5-related N-acetyltransferase.
 
    0.529
lptD
Organic solvent tolerance protein homolog; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
     0.493
RPA1995
Conserved hypothetical protein.
  
     0.468
RPA1865
Conserved hypothetical protein.
  
     0.467
RPA3431
Hypothetical protein.
  
    0.462
RPA1999
GCN5-related N-acetyltransferase:Aminotransferase, class-II; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
     0.453
RPA0249
Hypothetical protein; InterPro IPR000104:IPR000694.
  
     0.449
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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