Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPA3955Hypothetical protein; COGs COG0824. (100 aa)    
Predicted Functional Partners:
RPA0881
Hypothetical protein.
 
    0.684
RPA2375
Conserved hypothetical protein; COGs COG1807.
 
    0.604
mcyE
Possible McyE polykeitde synthase and peptide synthetase (AF183408).
  
  
 0.594
RPA1035
Conserved hypothetical protein.
 
     0.539
RPA3954
Thioredoxin reductase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
       0.505
fabD
Putative malonyl CoA-acyl carrier protein transacylase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
  
 0.469
RPA4133
Conserved hypothetical protein.
  
     0.461
RPA3958
Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
     0.455
RPA3936
Conserved hypothetical protein; COGs COG1807.
 
    0.448
RPA3973
Cytochrome c556; Low-spin monoheme cytochrome c.
  
    0.433
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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