Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPA3957Hpt domain. (119 aa)    
Predicted Functional Partners:
RPA3677
Conserved hypothetical protein.
  
    0.838
RPA1972
Sensor histidine kinase.
 
 
 0.789
RPA0729
Conserved hypothetical protein.
  
    0.788
RPA4581
Conserved hypothetical protein.
  
   
 0.776
RPA1508
Conserved hypothetical protein.
  
     0.773
RPA3420
Conserved unknown protein.
  
     0.773
RPA3679
Possible pilus assembly protein cpaD; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
     0.772
RPA3673
Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
    0.769
RPA0730
Conserved hypothetical protein.
  
    0.768
RPA2753
Conserved hypothetical protein.
  
     0.767
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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