Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPA3963Putative permease of ABC transporter. (383 aa)    
Predicted Functional Partners:
RPA3962
ATP-binding component of ABC transporter.
 
 0.999
RPA3961
Putative periplasmic binding protein for ABC transporter; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 0.997
RPA4237
ATP-binding component of ABC transporter.
 
 0.996
RPA4236
Mce4/Rv3499c/MTV023.06c protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 0.994
RPA4238
Putative permease of ABC transporter.
  
  
 
0.902
RPA3964
Putative muconate cycloisomerase.
       0.613
RPA0049
Possible ABC transporter ATP-binding protein (in rpoN upstream); Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
  
  0.612
bamA
Putative outer membrane protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
     0.568
RPA3061
Possible permease.
 
 
 0.564
RPA0144
Sulfate transporter/antisigma-factor antagonist domain.
  
 
 0.532
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.