node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RPA4000 | rplC | RPA4000 | RPA3250 | Adenylate/Guanylate cyclase. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.910 |
RPA4000 | rplP | RPA4000 | RPA3243 | Adenylate/Guanylate cyclase. | 50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.917 |
RPA4000 | rpmC | RPA4000 | RPA3242 | Adenylate/Guanylate cyclase. | 50S ribosomal protein L29; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. | 0.914 |
RPA4000 | rpsB | RPA4000 | RPA2922 | Adenylate/Guanylate cyclase. | 30S ribosomal protein S2; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the universal ribosomal protein uS2 family. | 0.905 |
RPA4000 | rpsC | RPA4000 | RPA3244 | Adenylate/Guanylate cyclase. | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.977 |
RPA4000 | rpsG | RPA4000 | RPA3254 | Adenylate/Guanylate cyclase. | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA. | 0.922 |
RPA4000 | rpsL | RPA4000 | RPA3255 | Adenylate/Guanylate cyclase. | 30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.924 |
RPA4000 | rpsN | RPA4000 | RPA3237 | Adenylate/Guanylate cyclase. | 30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site. | 0.921 |
RPA4000 | rpsO | RPA4000 | RPA0433 | Adenylate/Guanylate cyclase. | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. Belongs to the universal ribosomal protein uS15 family. | 0.968 |
RPA4000 | rpsQ | RPA4000 | RPA3241 | Adenylate/Guanylate cyclase. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.969 |
rplC | RPA4000 | RPA3250 | RPA4000 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Adenylate/Guanylate cyclase. | 0.910 |
rplC | rplP | RPA3250 | RPA3243 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.999 |
rplC | rpmC | RPA3250 | RPA3242 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 50S ribosomal protein L29; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. | 0.998 |
rplC | rpsB | RPA3250 | RPA2922 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 30S ribosomal protein S2; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the universal ribosomal protein uS2 family. | 0.997 |
rplC | rpsC | RPA3250 | RPA3244 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.998 |
rplC | rpsG | RPA3250 | RPA3254 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA. | 0.994 |
rplC | rpsL | RPA3250 | RPA3255 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.994 |
rplC | rpsN | RPA3250 | RPA3237 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site. | 0.993 |
rplC | rpsO | RPA3250 | RPA0433 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. Belongs to the universal ribosomal protein uS15 family. | 0.993 |
rplC | rpsQ | RPA3250 | RPA3241 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.998 |