Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPA4010Response regulator receiver (CheY-like protein). (125 aa)    
Predicted Functional Partners:
RPA4009
Putative signal transduction histidine kinase with GAF domain.
 
  
 0.840
RPA4417
Sensor histidine kinase with PAS/PAC and response regulator receiver domains.
  
 
 0.811
RPA3934
Sensor histidine kinase with a PAC motif and a response regulator receiver domain.
 
 
 0.798
RPA1767
Sensor histidine kinase with a PAC motif and a response regulator receiver domain.
 
 
 0.795
cckA
Sensor histidine kinase with multiple PAS and a response regulator receiver domain; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 
0.696
RPA3316
Possible chemotaxis cheB/cheR fusion protein.
  
 
 0.643
RPA3832
Putative diguanylate cyclase (GGDEF) with PAS/PAC domain.
  
 
 0.595
RPA4008
Hypothetical protein.
       0.568
RPA0980
Sensor histidine kinase with a PAS domain.
 
 
 0.560
RPA2836
Possible hydrolase.
  
    0.550
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
Server load: low (26%) [HD]