RPA4013 protein (Rhodopseudomonas palustris CGA009)

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Score

RPA4013

Putative ATP-binding component of ABC transporter. (532 aa)

Predicted Functional Partners:

rplU,

0.786

rplD

0.777

rpsC

0.772

rpsO

0.770

rpmD

0.766

rplC

0.765

rpmH,

0.764

rplM,

0.763

rplW

0.763

rpsG

0.763

Your Current Organism:

Rhodopseudomonas palustris CGA009

NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RPA4013	rplC	RPA4013	RPA3250	Putative ATP-binding component of ABC transporter.	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.765
RPA4013	rplD	RPA4013	RPA3249	Putative ATP-binding component of ABC transporter.	50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	0.777
RPA4013	rplM,	RPA4013	RPA2767	Putative ATP-binding component of ABC transporter.	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.763
RPA4013	rplU,	RPA4013	RPA0158	Putative ATP-binding component of ABC transporter.	Putative ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20.	0.786
RPA4013	rplW	RPA4013	RPA3248	Putative ATP-binding component of ABC transporter.	50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome.	0.763
RPA4013	rpmD	RPA4013	RPA3232	Putative ATP-binding component of ABC transporter.	Ribosomal protein L30; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	0.766
RPA4013	rpmH,	RPA4013	RPA0634	Putative ATP-binding component of ABC transporter.	Possible ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.	0.764
RPA4013	rpsC	RPA4013	RPA3244	Putative ATP-binding component of ABC transporter.	30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.772
RPA4013	rpsG	RPA4013	RPA3254	Putative ATP-binding component of ABC transporter.	30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA.	0.763
RPA4013	rpsO	RPA4013	RPA0433	Putative ATP-binding component of ABC transporter.	Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. Belongs to the universal ribosomal protein uS15 family.	0.770
rplC	RPA4013	RPA3250	RPA4013	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Putative ATP-binding component of ABC transporter.	0.765
rplC	rplD	RPA3250	RPA3249	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.	0.999
rplC	rplM,	RPA3250	RPA2767	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.998
rplC	rplU,	RPA3250	RPA0158	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Putative ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20.	0.992
rplC	rplW	RPA3250	RPA3248	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome.	0.999
rplC	rpmD	RPA3250	RPA3232	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Ribosomal protein L30; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	0.996
rplC	rpmH,	RPA3250	RPA0634	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Possible ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.	0.939
rplC	rpsC	RPA3250	RPA3244	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.999
rplC	rpsG	RPA3250	RPA3254	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA.	0.996
rplC	rpsO	RPA3250	RPA0433	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. Belongs to the universal ribosomal protein uS15 family.	0.992