STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA4022Putative branched-chain amino acid ABC transport system, ATP-binding protein. (260 aa)    
Predicted Functional Partners:
RPA4021
Putative branched-chain amino acid ABC transport system permease protein livm (liv-I protein m); Belongs to the binding-protein-dependent transport system permease family.
  
 0.998
ilvM
Putative branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
 0.982
RPA1231
Possible ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
 0.981
RPA4020
Possible branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
 0.977
RPA1750
Putative branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
 0.973
livM
Putative permease of ABC transporter (high-affinity branched-chain amino acid transport); Belongs to the binding-protein-dependent transport system permease family.
  
 0.953
RPA4044
Putative branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
 0.932
RPA4023
Putative branched-chain amino acid ABC transport system ATP-binding protein.
 
  
0.913
RPA4019
Putative branched-chain amino acid ABC transporter system substrate-binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
  
 0.890
RPA1419
Possible transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
 0.888
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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