Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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RPA4076Transcriptional regulator, LysR family; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the LysR transcriptional regulatory family. (307 aa)    
Predicted Functional Partners:
trxB
Thioredoxin reductase.
     
 0.867
RPA4151
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.720
RPA3796
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.682
cbbR
Cbb operon transcriptional regulator CbbR, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.652
RPA3172
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.619
RPA1746
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.591
RPA2565
O-acetylserine (thiol) lyase C-terminal portion.
 
   
 0.506
RPA4074
Putative leucine responsive transcriptional regulator LRP/BkdR, AsnC family.
  
  
 0.506
RPA4283
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.482
rpoD
RNA polymerase sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
 
 
 
 0.475
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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