RPA4086 protein (Rhodopseudomonas palustris CGA009)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RPA4086

Probable permease of ABC transporter. (370 aa)

Predicted Functional Partners:

RPA4088

0.962

RPA4087

0.918

RPA0681

0.838

RPA3789

0.821

RPA0573

0.772

RPA4089

0.636

RPA0682

0.629

nosF

0.589

RPA3790

0.554

RPA3026

0.446

Your Current Organism:

Rhodopseudomonas palustris CGA009

NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RPA0573	RPA0682	RPA0573	RPA0682	Putative ABC transporter (ATP-binding protein); Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	Possible ABC transporter ATP-binding component, membrane bound.	0.440
RPA0573	RPA4086	RPA0573	RPA4086	Putative ABC transporter (ATP-binding protein); Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	Probable permease of ABC transporter.	0.772
RPA0573	RPA4087	RPA0573	RPA4087	Putative ABC transporter (ATP-binding protein); Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	ABC-2 type transport system permease and double ATP-binding protein fusion.	0.440
RPA0681	RPA0682	RPA0681	RPA0682	Membrane permeases, predicted cation efflux pump; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	Possible ABC transporter ATP-binding component, membrane bound.	0.959
RPA0681	RPA3789	RPA0681	RPA3789	Membrane permeases, predicted cation efflux pump; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	Putative ATP-binding component of a transport system.	0.434
RPA0681	RPA4086	RPA0681	RPA4086	Membrane permeases, predicted cation efflux pump; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	Probable permease of ABC transporter.	0.838
RPA0681	RPA4087	RPA0681	RPA4087	Membrane permeases, predicted cation efflux pump; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	ABC-2 type transport system permease and double ATP-binding protein fusion.	0.831
RPA0682	RPA0573	RPA0682	RPA0573	Possible ABC transporter ATP-binding component, membrane bound.	Putative ABC transporter (ATP-binding protein); Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	0.440
RPA0682	RPA0681	RPA0682	RPA0681	Possible ABC transporter ATP-binding component, membrane bound.	Membrane permeases, predicted cation efflux pump; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	0.959
RPA0682	RPA3026	RPA0682	RPA3026	Possible ABC transporter ATP-binding component, membrane bound.	Similar to abortive infection protein.	0.607
RPA0682	RPA3789	RPA0682	RPA3789	Possible ABC transporter ATP-binding component, membrane bound.	Putative ATP-binding component of a transport system.	0.440
RPA0682	RPA4086	RPA0682	RPA4086	Possible ABC transporter ATP-binding component, membrane bound.	Probable permease of ABC transporter.	0.629
RPA0682	RPA4087	RPA0682	RPA4087	Possible ABC transporter ATP-binding component, membrane bound.	ABC-2 type transport system permease and double ATP-binding protein fusion.	0.821
RPA0682	RPA4088	RPA0682	RPA4088	Possible ABC transporter ATP-binding component, membrane bound.	Probable membrane fusion protein (HlyD family of secretion proteins) linked to ABC efflux pumps.	0.838
RPA0682	nosF	RPA0682	RPA2063	Possible ABC transporter ATP-binding component, membrane bound.	Putative NosF protein (an ABC transporter).	0.440
RPA3026	RPA0682	RPA3026	RPA0682	Similar to abortive infection protein.	Possible ABC transporter ATP-binding component, membrane bound.	0.607
RPA3026	RPA4086	RPA3026	RPA4086	Similar to abortive infection protein.	Probable permease of ABC transporter.	0.446
RPA3026	RPA4087	RPA3026	RPA4087	Similar to abortive infection protein.	ABC-2 type transport system permease and double ATP-binding protein fusion.	0.607
RPA3789	RPA0681	RPA3789	RPA0681	Putative ATP-binding component of a transport system.	Membrane permeases, predicted cation efflux pump; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	0.434
RPA3789	RPA0682	RPA3789	RPA0682	Putative ATP-binding component of a transport system.	Possible ABC transporter ATP-binding component, membrane bound.	0.440