Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPA4087ABC-2 type transport system permease and double ATP-binding protein fusion. (931 aa)    
Predicted Functional Partners:
RPA4088
Probable membrane fusion protein (HlyD family of secretion proteins) linked to ABC efflux pumps.
  
 0.963
RPA4086
Probable permease of ABC transporter.
 
  
0.918
RPA0681
Membrane permeases, predicted cation efflux pump; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
  
 0.831
RPA0682
Possible ABC transporter ATP-binding component, membrane bound.
  
  
 0.821
nosY
Putative NosY protein, possible ABC permease.
  
 
 0.692
RPA4089
Patatin-like phospholipase domain.
     
 0.644
RPA0683
Possible ABC transporter permease component.
 
  
0.634
RPA3026
Similar to abortive infection protein.
  
  
 0.607
nosR
Regulatory protein NosR.
  
  
 0.582
RPA3200
Putative dual serine/threonine-protein kinase/phosphatase.
  
 
 0.577
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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