Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RPA4089Patatin-like phospholipase domain. (396 aa)    
Predicted Functional Partners:
RPA4088
Probable membrane fusion protein (HlyD family of secretion proteins) linked to ABC efflux pumps.
  
  
 0.658
RPA4087
ABC-2 type transport system permease and double ATP-binding protein fusion.
     
 0.644
RPA4086
Probable permease of ABC transporter.
       0.636
RPA4226
Putative signal transduction histidine kinase with Chase domain.
  
     0.473
RPA4090
Conserved hypothetical protein.
       0.468
RPA3746
Possible RND Superfamily transporter.
 
     0.433
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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