Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPA4119Hypothetical protein, possible TrbK. (128 aa)    
Predicted Functional Partners:
trbG2
Conjugal transfer protein trbG.
  
    0.807
trbI2
Putative conjugal transfer protein trbI.
       0.797
trbF2
Conjugal transfer protein trbF.
       0.797
RPA4118
Conjugal transfer protein trbL.
       0.797
RPA4120
Possible conjugal transfer protein trbJ.
       0.797
trbE2
Conjugal transfer protein trbE.
       0.797
RPA4122
Conjugal transfer protein TrbD.
       0.797
trbC2
Conjugal transfer protein trbC.
       0.797
trbB2
Conjugal transfer protein trbB.
       0.781
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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