Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPA4130Unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (297 aa)    
Predicted Functional Partners:
RPA4129
Possible transcriptional regulator, XRE family; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
  
 0.959
RPA2289
Hypothetical protein; InterPro IPR001440.
 
     0.647
RPA4126
Hypothetical protein; InterPro IPR000594 COGs COG0476.
  
    0.617
RPA4128
Conserved hypothetical protein.
       0.612
RPA4125
Conserved hypothetical protein.
  
    0.605
RPA4127
Conserved hypothetical protein.
       0.595
RPA1644
Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
     0.456
flgL
Possible flagellin and hook associated protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
  
   
 0.440
RPA0642
Conserved hypothetical protein.
  
     0.429
RPA4134
Transcriptional regulatorf, XRE family.
 
  
 0.423
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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