STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA4147Putative nucleoside phosphorylase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (488 aa)    
Predicted Functional Partners:
RPA4149
Beta-lactamase-like; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
    0.989
prsA
Putative ribose-phosphate pyrophosphokinase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the ribose-phosphate pyrophosphokinase family.
 
  
 0.968
RPA1101
Putative cytidine deaminase.
  
 
 0.960
surE
Survival protein surE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
    
 0.930
RPA0955
Putative 5`-nucleotidase family protein; Belongs to the 5'-nucleotidase family.
  
 
 0.911
phnN
ATP-binding component, PhnN protein, possible kinase; Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP).
 
      0.900
era
Possible GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
  
    0.816
RPA2168
Putative H+/nucleoside symporter; Citation: Saier et al. BBA 1422:1-56, 1999.
  
  
 0.633
guaA
GMP synthetase; Catalyzes the synthesis of GMP from XMP.
     
 0.497
RPA2271
Putative Pyruvate kinase; Belongs to the pyruvate kinase family.
   
  
 0.488
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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