STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA4150Conserved hypothetical protein; Belongs to the 4-oxalocrotonate tautomerase family. (132 aa)    
Predicted Functional Partners:
RPA3171
Conserved hypothetical protein; COGs COG1942; Belongs to the 4-oxalocrotonate tautomerase family.
  
  
 
0.914
RPA1177
4-oxalocrotonate tautomerase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the 4-oxalocrotonate tautomerase family.
     
  0.900
CPS1,
Putative Gly-X carboxypeptidase YSCS precursor.
     
 0.745
RPA4151
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
   
 0.720
RPA2102
Conserved hypothetical protein.
  
     0.557
RPA0223
Conserved hypothetical protein; InterPro IPR000516.
  
     0.494
RPA4469
Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
     0.434
RPA2022
Specialized acyl carrier protein.
  
    0.410
RPA4491
Conserved hypothetical protein; InterPro IPR001343 COGs COG3210.
  
     0.406
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.