Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
fbpAPeriplasmic iron binding protein FbpA precursor; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (336 aa)    
Predicted Functional Partners:
fpbB
Putative iron transport system permease protein.
 
 
 0.996
RPA3454
Putative transmembrane transport protein, MFS family.
 
  
 0.597
RPA4808
Possible hexuronate transporter.
  
  
 0.543
RPA4151
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
     
 0.507
RPA1846
Unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
    0.505
RPA1643
Possible high affinity iron permease FTR1.
   
  
 0.435
potA
Putative spermidine/putrescine transport system ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
  
 0.431
RPA1479
Putative transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
  
 0.429
RPA0155
Putative tolR/exbD protein.
  
  
 0.422
TolR
Putative tolR protein, uptake of enterochelin; tonB-dependent uptake of B colicins.
  
  
 0.422
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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