Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPA4167Putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domains. (912 aa)    
Predicted Functional Partners:
RPA3832
Putative diguanylate cyclase (GGDEF) with PAS/PAC domain.
 
 
 
 0.873
RPA4417
Sensor histidine kinase with PAS/PAC and response regulator receiver domains.
  
 
 0.839
RPA1180
Putative cylclic diguanylate phosphodiesterase (EAL).
 
 
 0.737
RPA1681
Sensor histidine kinase with a response regulator receiver domain.
  
 
 0.736
RPA0853
Sensor histidine kinase, possible proline sensor PrlS; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
 
 0.694
RPA0529
Putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL); Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 
0.691
RPA0494
Sensor histidine kinase with PAS/PAC and Response regulator receiver domains.
  
 
 0.665
RPA0583
Sensor histidine kinase with PAS/PAC and Response regulator receiver domains; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
 
 0.665
RPA1558
Sensor histidine kinase with multiple PAS/PAC and a response regulator receiver domain.
  
 
 0.665
RPA3170
Putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS and GAF domains.
 
 
 
0.641
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
Server load: medium (62%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.