Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPA4183Hypothetical protein. (50 aa)    
Predicted Functional Partners:
pntA-2
Nicotinamide nucleotide transhydrogenase, subunit alpha1; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
    0.663
pntA
Nicotinamide nucleotide transhydrogenase, subunit alpha2.
  
    0.639
pntB
Nicotinamide nucleotide transhydrogenase, subunit beta; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the PNT beta subunit family.
       0.625
RPA4184
Hypothetical protein.
       0.479
cioB
Possible cytochrome bd-I oxidase subunit I [EC:1.10.3.-]; 3 probable transmembrane helices predicted byTMHMM2.0.
      
 0.429
norE
Putative denitrification protein NorE.
      
 0.429
RPA4452
Putative aromatic-L-amino-acid decarboxylase.
      
 0.429
QxtA
Cytochrome bd-quinol oxidase subunit I.
      
 0.429
qxtB
Putative cytochrome bd-quinol oxidase subunit II.
      
 0.429
RPA1006
Possible protocatechuate 4,5-dioxygenase small subunit (AB035121); Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
      
 0.423
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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