STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
aadRAnaerobic aromatic degradation regulator aadR, Crp/Fnr family; Transcriptional activator of anaerobic gene expression. For aromatic acid degradation. Also required for the anaerobic degradation of benzoate. (239 aa)    
Predicted Functional Partners:
hbaR
Hydroxybenzoate anaerobic degradation regulatory protein HbaR, Crp/Fnr family.
  
  
 0.904
fixL
Two component low oxygen sensor histidine kinase with PAS domains, fixL; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
 
 0.763
badM
Putative transcriptional regulator, badM.
  
  
 0.761
badB
Ferredoxin.
  
  
 0.732
badR
Benzoate anaerobic degradation transcriptional regulator BadR, MarR family; Transcriptional activator of genes for the anaerobic degradation of benzoate.
   
  
 0.727
RPA4233
Cyclic nucleotide regulated K+ channel.
     
 0.709
RPA3863
Transcriptional regulator, Crp/Fnr family.
  
  
 0.651
RPA4422
Transcriptional regulator, Crp/Fnr family.
  
   
 0.584
RPA4235
Putative cytochrome c, class I.
  
  
 0.545
hbaA
4-hydroxybenzoate-CoA ligase; Catalyzes the ligation of 4-hydroxybenzoate, benzoate or cyclohex-1,4-dienecarboxylate and CoA at the expense of ATP. The enzyme shows low activity towards cyclo-2,5-dienecarboxylate, 4- fluorobenzoate, 4-chlorobenzoate and 2-methoxybenzoate. Belongs to the ATP-dependent AMP-binding enzyme family. Benzoate-CoA ligase subfamily.
   
  
 0.531
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.