Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPA4239Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (153 aa)    
Predicted Functional Partners:
RPA4238
Putative permease of ABC transporter.
  
  
 0.882
RPA4236
Mce4/Rv3499c/MTV023.06c protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
  
 0.830
RPA4249
Response regulator receiver (CheY-like protein); Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
   
  
 0.756
RPA1672
Conserved hypothetical protein; InterPro IPR007055.
  
  
 0.749
RPA4235
Putative cytochrome c, class I.
     
 0.748
RPA1673
D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
      
 0.741
fixK2
Nitrogen fixation transcriptional regulator fixK2, Crp/Fnr family.
     
 0.639
RPA4237
ATP-binding component of ABC transporter.
  
    0.560
RPA0252
Conserved hypothetical protein; InterPro IPR000051 COGs COG2264.
  
     0.544
RPA0538
Putative Omp2b porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
     0.454
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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