Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
fixJTwo-component nitrogen fixation transcriptional regulator fixJ, LuxR family; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (203 aa)    
Predicted Functional Partners:
fixL
Two component low oxygen sensor histidine kinase with PAS domains, fixL; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 0.999
RPA3316
Possible chemotaxis cheB/cheR fusion protein.
  
 
 0.927
vnfA
Sigma-54 dependent, Vanadium nitrogenase transcriptional regulator, VnfA.
 
  
 0.899
anfA
Sigma-54 dependent, Iron nitrogenase transcriptional regulator, AnfA.
 
  
 0.898
RPA1313
Sensor histidine kinase with multiple PAS/PAC domains.
 
 
 0.825
RPA2292
Sensor histidine kinase.
 
 0.825
nifA
Mo/Fe nitrogenase specific transcriptional regulator, NifA; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
  
 0.773
cheR1
Chemotaxis methyltransferase, CheR1; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP.
      0.757
RPA3434
Universal stress protein (Usp).
  
  
 0.746
RPA1260
Universal stress protein (Usp); Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
     
 0.744
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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