Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| fdsG | hydC | RPA0732 | RPA0134 | Putative NAD-dependent formate dehydrogenase gamma subunit. | Hydrogenase gamma-fused hydrogenase large and small subunit. | 0.982 |
| fdsG | nuoB2 | RPA0732 | RPA4263 | Putative NAD-dependent formate dehydrogenase gamma subunit. | NADH-ubiquinone dehydrogenase chain B; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. | 0.926 |
| fdsG | nuoCD | RPA0732 | RPA4262 | Putative NAD-dependent formate dehydrogenase gamma subunit. | NADH-ubiquinone dehydrogenase chain C,D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family. | 0.998 |
| fdsG | nuoE1 | RPA0732 | RPA2947 | Putative NAD-dependent formate dehydrogenase gamma subunit. | NADH-ubiquinone dehydrogenase chain E; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. | 0.769 |
| fdsG | nuoF2 | RPA0732 | RPA4260 | Putative NAD-dependent formate dehydrogenase gamma subunit. | NADH-ubiquinone dehydrogenase chain F. | 0.988 |
| fdsG | nuoG2 | RPA0732 | RPA4259 | Putative NAD-dependent formate dehydrogenase gamma subunit. | NADH-ubiquinone dehydrogenase chain G; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. | 0.969 |
| fdsG | nuoH2 | RPA0732 | RPA4258 | Putative NAD-dependent formate dehydrogenase gamma subunit. | NADH-ubiquinone dehydrogenase chain H; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone. | 0.927 |
| fdsG | nuoI2 | RPA0732 | RPA4257 | Putative NAD-dependent formate dehydrogenase gamma subunit. | NADH-ubiquinone dehydrogenase chain I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. | 0.813 |
| fdsG | nuoJ2 | RPA0732 | RPA4256 | Putative NAD-dependent formate dehydrogenase gamma subunit. | NADH-ubiquinone dehydrogenase chain J; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. | 0.910 |
| hydC | fdsG | RPA0134 | RPA0732 | Hydrogenase gamma-fused hydrogenase large and small subunit. | Putative NAD-dependent formate dehydrogenase gamma subunit. | 0.982 |
| hydC | nuoCD | RPA0134 | RPA4262 | Hydrogenase gamma-fused hydrogenase large and small subunit. | NADH-ubiquinone dehydrogenase chain C,D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family. | 0.673 |
| hydC | nuoE1 | RPA0134 | RPA2947 | Hydrogenase gamma-fused hydrogenase large and small subunit. | NADH-ubiquinone dehydrogenase chain E; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. | 0.986 |
| hydC | nuoE2 | RPA0134 | RPA4261 | Hydrogenase gamma-fused hydrogenase large and small subunit. | NADH-ubiquinone dehydrogenase chain E. | 0.984 |
| hydC | nuoF2 | RPA0134 | RPA4260 | Hydrogenase gamma-fused hydrogenase large and small subunit. | NADH-ubiquinone dehydrogenase chain F. | 0.987 |
| hydC | nuoG2 | RPA0134 | RPA4259 | Hydrogenase gamma-fused hydrogenase large and small subunit. | NADH-ubiquinone dehydrogenase chain G; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. | 0.415 |
| hydC | nuoI2 | RPA0134 | RPA4257 | Hydrogenase gamma-fused hydrogenase large and small subunit. | NADH-ubiquinone dehydrogenase chain I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. | 0.599 |
| nuoB2 | fdsG | RPA4263 | RPA0732 | NADH-ubiquinone dehydrogenase chain B; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. | Putative NAD-dependent formate dehydrogenase gamma subunit. | 0.926 |
| nuoB2 | nuoCD | RPA4263 | RPA4262 | NADH-ubiquinone dehydrogenase chain B; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. | NADH-ubiquinone dehydrogenase chain C,D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family. | 0.999 |
| nuoB2 | nuoE1 | RPA4263 | RPA2947 | NADH-ubiquinone dehydrogenase chain B; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. | NADH-ubiquinone dehydrogenase chain E; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. | 0.961 |
| nuoB2 | nuoE2 | RPA4263 | RPA4261 | NADH-ubiquinone dehydrogenase chain B; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. | NADH-ubiquinone dehydrogenase chain E. | 0.994 |
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