Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPA4316Conserved hypothetical protein; COGs COG3637. (291 aa)    
Predicted Functional Partners:
RPA4315
Conserved hypothetical protein.
 
  
 0.796
RPA3679
Possible pilus assembly protein cpaD; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
     0.755
RPA0880
Hypothetical protein; InterPro IPR000694.
  
     0.746
RPA0053
Conserved hypothetical protein.
  
     0.743
RPA2667
Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
     0.740
RPA2713
Conserved hypothetical protein.
  
     0.731
RPA3411
Conserved hypothetical protein; InterPro IPR000694.
  
     0.712
RPA1064
Conserved hypothetical protein; InterPro IPR000387.
  
     0.690
RPA2752
Possible succinoglycan biosynthesis transport protein exoP.
  
     0.674
RPA0536
Acyltransferase 3 family.
  
     0.653
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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