RPA4372 protein (Rhodopseudomonas palustris CGA009)

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Score

RPA4372

Class I peptide chain release factor domain. (139 aa)

Predicted Functional Partners:

rplU,

0.967

rpsP,

0.925

rpsL

0.919

rpmA,

0.918

rplT

0.915

rpmF,

0.915

rplS,

0.911

rplB

0.906

rpsG

0.906

rplQ

0.902

Your Current Organism:

Rhodopseudomonas palustris CGA009

NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RPA4372	rplB	RPA4372	RPA3247	Class I peptide chain release factor domain.	50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome.	0.906
RPA4372	rplQ	RPA4372	RPA3225	Class I peptide chain release factor domain.	50S ribosomal protein L17; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	0.902
RPA4372	rplS,	RPA4372	RPA0241	Class I peptide chain release factor domain.	50s ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; Belongs to the bacterial ribosomal protein bL19 family.	0.911
RPA4372	rplT	RPA4372	RPA0038	Class I peptide chain release factor domain.	Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.915
RPA4372	rplU,	RPA4372	RPA0158	Class I peptide chain release factor domain.	Putative ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20.	0.967
RPA4372	rpmA,	RPA4372	RPA0159	Class I peptide chain release factor domain.	Ribosomal protein L27; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the bacterial ribosomal protein bL27 family.	0.918
RPA4372	rpmF,	RPA4372	RPA0526	Class I peptide chain release factor domain.	50S ribosomal protein L32; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	0.915
RPA4372	rpsG	RPA4372	RPA3254	Class I peptide chain release factor domain.	30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA.	0.906
RPA4372	rpsL	RPA4372	RPA3255	Class I peptide chain release factor domain.	30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.	0.919
RPA4372	rpsP,	RPA4372	RPA0244	Class I peptide chain release factor domain.	Ribosomal protein S16; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	0.925
rplB	RPA4372	RPA3247	RPA4372	50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome.	Class I peptide chain release factor domain.	0.906
rplB	rplQ	RPA3247	RPA3225	50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome.	50S ribosomal protein L17; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	0.996
rplB	rplS,	RPA3247	RPA0241	50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome.	50s ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; Belongs to the bacterial ribosomal protein bL19 family.	0.993
rplB	rplT	RPA3247	RPA0038	50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome.	Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.993
rplB	rplU,	RPA3247	RPA0158	50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome.	Putative ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20.	0.991
rplB	rpmA,	RPA3247	RPA0159	50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome.	Ribosomal protein L27; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the bacterial ribosomal protein bL27 family.	0.990
rplB	rpmF,	RPA3247	RPA0526	50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome.	50S ribosomal protein L32; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	0.987
rplB	rpsG	RPA3247	RPA3254	50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome.	30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA.	0.998
rplB	rpsL	RPA3247	RPA3255	50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome.	30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.	0.998
rplB	rpsP,	RPA3247	RPA0244	50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome.	Ribosomal protein S16; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	0.989