Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPA4397Possible substrate binding protein of ABC transporter system; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (388 aa)    
Predicted Functional Partners:
RPA4398
Putative branched-chain amino acid ABC transporter, ATP-binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
    0.908
RPA4401
Possible branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
    0.897
RPA4400
Possible branched-chain amino acid ABC transport system permease; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.891
RPA4399
Possible branched-chain amino acid transport system ATP-binding protein.
 
  
 0.877
RPA4036
Possible branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.751
RPA2409
Possible AmiR antitermination protein; Citation: EMBO J 1999 Oct 1;18(19):5175-86.
  
 
 0.677
RPA4035
Possible ABC transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.641
RPA4396
Possible transglycolase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
       0.618
hbaG
Putative ABC transporter subunit, membrane spanning domain + ATP-binding component; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.612
RPA1566
Possible branched-chain amino acid transport system ATP-binding protein; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.612
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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