Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RPA4407Permease protein of sugar ABC transporter. (300 aa)    
Predicted Functional Partners:
RPA4408
ATP-binding protein of sugar ABC transporter; Belongs to the ABC transporter superfamily.
 
 0.997
RPA4406
Sugar ABC transport system, permease component.
 
 0.996
RPA4409
ATP-binding protein of sugar ABC transporter; Belongs to the ABC transporter superfamily.
 
 0.996
RPA4404
Putative periplasmic binding ABC transporter protein, probable sugar binding; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 0.993
RPA4405
Conserved hypothetical protein.
 
    0.966
RPA1397
Putative sugar ABC transporter, permease protein.
 
 
 0.906
glpD
Glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
 
   
 0.867
glpR
Glycerol-3-phosphate regulon repressor glpR, DeoR family.
 
   
 0.788
RPA0127
Putative permease protein of sugar ABC transporter.
 
 
 0.777
RPA3468
Putative permease protein of sugar ABC transporter.
 
 
 0.763
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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