Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPA44252-hydroxyhepta-2,4-diene-1,7-dioate isomerase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (280 aa)    
Predicted Functional Partners:
RPA2684
Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
    
 0.862
RPA4426
Glutathione S-transferase, N-terminal.
  
  
 0.634
RPA4424
Beta-lactamase-like; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
    0.581
hmgA
Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate.
  
  
 0.576
hpcG
2-oxo-hepta-3-ene-1,7-dioate hydratase.
  
  
 0.500
RPA4423
Conserved unknown protein.
       0.485
hpaD
Putative 3,4-dihydroxyphenylacetate 2,3-dioxygenase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
  
 0.483
hpcH
Putative 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the HpcH/HpaI aldolase family.
  
  
 0.466
RPA3650
ATP-dependent DNA ligase.
  
    0.418
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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