Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
RPA4429Uncharacterized iron-regulated membrane protein DUF337. (381 aa)    
Predicted Functional Partners:
RPA4430
Putative TonB-dependent receptor.
 
  
 0.930
RPA3711
Possible sulfite reductase (NADPH).
      0.902
RPA1347
RNA polymerase ECF-type sigma factor, possible FecI; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.643
RPA1334
RNA polymerase ECF-type sigma factor, possible FecI; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.604
RPA2929
Conserved hypothetical protein.
  
    0.602
fecR3
Probable FecR, iron siderophore sensor protein.
 
   
 0.572
fiu
Putative outer membrane receptor for iron transport; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
  
 0.566
RPA1340
Probable FecR, iron siderophore sensor protein.
 
   
 0.550
RPA1823
TonB dependent receptor.
  
  
 0.545
RPA1335
Probable FecR, iron siderophore sensor protein.
 
   
 0.538
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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