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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPA4431Peptidase M23/M37. (676 aa)    
Predicted Functional Partners:
RPA1867
Putative penicillin-binding protein.
  
   
 0.709
RPA0577
Possible penicillin-binding protein.
  
  
 0.699
RPA2452
Putative penicillin-binding protein 1A; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
   
 0.693
RPA0168
Putative filament-A precursor.
 
   
 0.649
lptD
Organic solvent tolerance protein homolog; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
 
  
 0.621
RPA2853
Proline-rich region; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
  
 0.601
RPA2713
Conserved hypothetical protein.
  
     0.595
RPA3411
Conserved hypothetical protein; InterPro IPR000694.
  
     0.579
RPA0487
Conserved unknown protein; InterPro IPR006025 COGs COG0501.
  
     0.577
RPA1160
Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
     0.575
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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