STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA4471Conserved hypothetical protein; InterPro IPR006311:IPR006663 COGs COG2143. (197 aa)    
Predicted Functional Partners:
RPA4473
Conserved hypothetical protein; InterPro IPR006663.
 
     0.922
RPA4475
Conserved hypothetical protein; COGs COG2391.
 
     0.882
soxY2
Putative sulfur oxidation protein soxY; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
   
 0.821
soxY1
Putative sulfur oxidation protein.
 
   
 0.819
RPA4472
Putative c-type cytochrome biogenesis protein.
     
 0.812
soxZ2
Putative sulfur oxidation protein soxZ; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
  
 0.807
RPA4468
Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
     0.804
soxC
Sulfite dehydrogenase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
     0.803
soxZ1
Putative sulfur oxidation protein.
 
   
 0.798
soxB
Sulfur/thiosulfate oxidation protein SoxB; Belongs to the 5'-nucleotidase family.
 
   
 0.788
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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