STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
RPA4472Putative c-type cytochrome biogenesis protein. (247 aa)    
Predicted Functional Partners:
RPA4471
Conserved hypothetical protein; InterPro IPR006311:IPR006663 COGs COG2143.
     
 0.812
RPA4473
Conserved hypothetical protein; InterPro IPR006663.
 
   
 0.751
RPA4744
Possible thioredoxin-like protein.
 
  
 0.740
cycZ,
Heme exporter protein C (ABC transporter permease component); Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family.
  
  
 0.730
cycY,
Putative cytochrome c biogenesis protein, thiol:disulfide interchange protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
  
 0.632
RPA4474
Transcriptional regulator, ArsR family.
     
 0.548
trxA
Thioredoxin; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the thioredoxin family.
 
  
 0.529
RPA4475
Conserved hypothetical protein; COGs COG2391.
     
 0.521
rlgA
DNA invertase gene rlgA.
  
    0.475
mcyE
Possible McyE polykeitde synthase and peptide synthetase (AF183408).
  
  
 0.451
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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