STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA4509Possible TrapT family, fused dctQ-M subunits, C4-dicarboxylate transport. (706 aa)    
Predicted Functional Partners:
RPA4510
Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
  0.997
RPA4508
Conserved hypothetical protein.
 
    0.976
RPA0405
Conserved hypothetical protein; COGs COG2358.
 
    0.759
RPA3458
Possible TrapT family, dctP subunit, C4-dicarboxylate periplasmic binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
    0.710
RPA1881
Hypothetical protein; COGs COG2358.
 
    0.683
RPA4556
Possible TrapT family, dctP subunit, C4-dicarboxylate periplasmic binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
    0.522
RPA1784
TrapT family, dctM subunit, C4-dicarboxylate transport.
  
    0.474
dctM2
TrapT family, dctM subunit, C4-dicarboxylate transport.
  
    0.441
dctP1
TrapT family, dctP subunit, C4-dicarboxylate periplasmic binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
    0.418
RPA2541
TrapT family, dctM subunit, C4-dicarboxylate transport.
  
    0.405
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.