Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPA4514Possible alkaline phosphatase D precursor. (566 aa)    
Predicted Functional Partners:
RPA0391
Possible alkaline phosphatase; Belongs to the alkaline phosphatase family.
  
 
 0.953
gch1
Possible GTP cyclohydrolase I; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
    
 0.928
folB
Putative dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.
     
 0.911
ptpS
Putative 6-pyruvol tetrahydrobiopterin synthase.
    
  0.901
phnI
PhnI protein, phosphonate metabolism, function unknown.
   
  
 0.609
RPA4513
Putative signal transduction histidine kinase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
    0.551
nadK
DUF15 protein; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.
   
 
  0.503
RPA4515
Uncharacterized protein family UPF0065:Tat pathway signal; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
       0.487
RPA4512
Possible response regulator receiver.
       0.443
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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