Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPA4558Possible dehydratase, MaoC family. (150 aa)    
Predicted Functional Partners:
RPA4559
Putative citrate lyase beta chain; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.960
RPA4557
Conserved hypothetical protein; InterPro IPR003673 COGs COG1804; Belongs to the CoA-transferase III family.
 
  
 0.745
RPA0233
Putative Citrate lyase beta chain (acyl lyase subunit) (citE); Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.687
RPA4553
Putative acyl-CoA dehydrogenase.
 
 0.660
RPA4560
Transcriptional regulator, IclR family.
  
    0.651
katE
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
   
 0.628
RPA4552
Possible 4-hydroxybutyrate-CoA transferase/hydrolase.
  
  
 0.541
RPA1612
Putative acyl-CoA dehydrogenase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 0.536
RPA4709
Conserved hypothetical protein.
  
 
 0.528
RPA0480
Possible acyl-CoA dehydrogenase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 0.526
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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