Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Experiments
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[Homology]
Score
RPA4560Transcriptional regulator, IclR family. (243 aa)    
Predicted Functional Partners:
RPA1405
Putative urea amidolyase.
  
  
 0.908
RPA3718
Transcriptional regulator, IclR family; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
     0.765
RPA4559
Putative citrate lyase beta chain; Belongs to the HpcH/HpaI aldolase family.
 
     0.698
RPA4558
Possible dehydratase, MaoC family.
  
    0.651
RPA4557
Conserved hypothetical protein; InterPro IPR003673 COGs COG1804; Belongs to the CoA-transferase III family.
 
     0.598
dur1
DUF213; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
    0.559
uahA
Urea amidolyase-related.
  
    0.547
RPA4556
Possible TrapT family, dctP subunit, C4-dicarboxylate periplasmic binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
     0.534
RPA2036
Possible transcriptional regulator, GntR family.
 
  
 0.512
RPA4555
Possible TrapT family, dctQ subunit, C4-dicarboxylate transport.
 
  
 0.481
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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